| Fin | St | Driver | # | Owner | Car | Laps | Money | Status | Laps Led |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 1 | Tsugio Matsuda 松田 次生 | 1 | Kazuyoshi Hoshino | Lola B06/51/Toyota RV8J | 30 | 23,535 | running | |
| 2 | 5 | André Lotterer | 36 | Tachi Oiwa Motor Sport | Lola B06/51/Toyota RV8J | 30 | 11,767 | running | |
| 3 | 3 | Takashi Kogure 小暮 卓史 | 32 | Satoru Nakajima | Lola B06/51/Honda HF386E | 30 | 7,060 | running | |
| 4 | 6 | João Paulo Lima de Oliveira | 4 | Masahiko Kondo | Lola B06/51/Toyota RV8J | 30 | running | ||
| 5 | 8 | Kohei Hirate 平手 晃平 | 20 | Kazuyoshi Hoshino | Lola B06/51/Toyota RV8J | 30 | running | ||
| 6 | 9 | Loïc Duval | 31 | Satoru Nakajima | Lola B06/51/Honda HF386E | 30 | running | ||
| 7 | 7 | Naoki Yokomizo 横溝 直輝 | 3 | Masahiko Kondo | Lola B06/51/Toyota RV8J | 30 | running | ||
| 8 | 10 | Satoshi Motoyama 本山 哲 | 7 | Team LeMans | Lola B06/51/Toyota RV8J | 30 | running | ||
| 9 | 12 | Kosuke Matsuura 松浦 孝亮 | 40 | Kiyoshi Muraoka | Lola B06/51/Honda HF386E | 30 | running | ||
| 10 | 16 | Ronnie Quintarelli | 47 | Haruhisa Urabe | Lola B06/51/Toyota RV8J | 30 | running | ||
| 11 | 17 | Roberto Streit | 67 | Haruhisa Urabe | Lola B06/51/Toyota RV8J | 30 | running | ||
| 12 | 20 | Takuya Izawa 伊沢 拓也 | 56 | Aguri Suzuki | Lola B06/51/Honda HF386E | 30 | running | ||
| 13 | 18 | Seiji Ara 荒 聖治 | 37 | Tachi Oiwa Motor Sport | Lola B06/51/Toyota RV8J | 30 | running | ||
| 14 | 14 | Hiroaki Ishiura 石浦 宏明 | 8 | Team LeMans | Lola B06/51/Toyota RV8J | 30 | running | ||
| 15 | 19 | Yuji Ide 井出 有治 | 55 | Aguri Suzuki | Lola B06/51/Honda HF386E | 30 | running | ||
| 16 | 13 | Takeshi Tsuchiya 土屋 武士 | 41 | Kiyoshi Muraoka | Lola B06/51/Honda HF386E | 30 | running | ||
| 17 | 11 | Yuji Tachikawa 立川 祐路 | 48 | Haruhisa Urabe | Lola B06/51/Toyota RV8J | 30 | running | ||
| 18 | 15 | Hiroki Yoshimoto 吉本 大樹 | 6 | Dijon Cars | Lola B06/51/Honda HF386E | 30 | running | ||
| 19 | 4 | Toshihiro Kaneishi 金石 年弘 | 5 | Dijon Cars | Lola B06/51/Honda HF386E | 24 | did not finish | ||
| 20 | 2 | Benoît Tréluyer | 2 | Kazuyoshi Hoshino | Lola B06/51/Toyota RV8J | 14 | did not finish |